Index

_

_calculate_limitation_terms() (JmaxLimitationABC method) (JmaxLimitationNone method) (JmaxLimitationSmith19 method) (JmaxLimitationWang17 method)

_populate_pooch_registry() (in module pyrealm.core.datasets)

A

A_c (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) a_hd (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] A_j (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) A_shade (TwoLeafAssimilation attribute) A_sun (TwoLeafAssimilation attribute) absorption (CommunityCanopyData attribute) acclim_model (SubdailyPModel attribute) AcclimationModel (class in pyrealm.pmodel.acclimation) add_cohort_data() (CohortMethods method) add_cohorts() (Community method) adv_to_frac_k (C3C4Const attribute), [1] adv_to_frac_q (C3C4Const attribute), [1] AET AI Aj_shade (TwoLeafAssimilation attribute) Aj_sun (TwoLeafAssimilation attribute) Allometry allow_holdover (AcclimationModel attribute) allow_partial_data (AcclimationModel attribute) alpha (AcclimationModel attribute) annual_growing_season_length (FaparLimitation attribute) annual_mean_ca (FaparLimitation attribute) annual_mean_chi (FaparLimitation attribute) annual_mean_vpd (FaparLimitation attribute)

annual_total_potential_gpp (FaparLimitation attribute) annual_total_precip (FaparLimitation attribute) AnnualValueCalculator (class in pyrealm.core.time_series) apply_acclimation() (AcclimationModel method) apply_gpp_conversion_factor() (PModel method) (PModelABC method) (SubdailyPModel method) apply_gpp_penalty_factor() (PModel method) (PModelABC method) (SubdailyPModel method) array_reference_kphio_ok (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) ArrayType (in module pyrealm.core.xarray) arrhenius_jmax (PModelConst attribute), [1] ARRHENIUS_METHOD_REGISTRY (in module pyrealm.pmodel.arrhenius) arrhenius_vcmax (PModelConst attribute), [1] ArrheniusFactorABC (class in pyrealm.pmodel.arrhenius) at_dbh (StemAllometry attribute) atmos_transmission_par (TwoLeafConst attribute) atmospheric_scattering_coef (TwoLeafConst attribute) attrs (FaparLimitationMethodABC attribute) (FaparLimitationMethodCai attribute) (FaparLimitationMethodZhu attribute) (PhenologyMethodABC attribute) (PhenologyMethodZhou attribute) (PhenologyMethodZhu attribute) Av_shade (TwoLeafAssimilation attribute) Av_sun (TwoLeafAssimilation attribute) average_layer_absorption (CommunityCanopyData attribute) average_layer_fapar (CommunityCanopyData attribute) average_layer_lai (CommunityCanopyData attribute)

B

badeck_postfrac (IsotopesConst attribute), [1] beam_extinction_coef (TwoLeafIrradiance attribute) beam_irradiance (TwoLeafIrradiance attribute) beam_reflectance (TwoLeafIrradiance attribute) bernacchi_gs (PModelConst attribute), [1] bernacchi_kmm (PModelConst attribute), [1] beta (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute)

beta_cost_ratio_c3 (PModelConst attribute), [1] beta_cost_ratio_c4 (PModelConst attribute), [1] Bounds (class in pyrealm.core.bounds) BoundsChecker (class in pyrealm.core.bounds) broadcast_time() (in module pyrealm.core.time_series)

C

c3_forest_closure_gpp (C3C4Const attribute), [1] C3C4Competition (class in pyrealm.pmodel.competition) C3C4Const (class in pyrealm.constants) (class in pyrealm.constants.competition_const) c4 (CarbonIsotopes attribute) (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) ca (PModelEnvironment attribute) ca_ratio (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] cai_f0_coefficients (PhenologyConstNew attribute) cai_sigma (PhenologyConstNew attribute) cai_z (PhenologyConstNew attribute) calculate_arrhenius_factor() (ArrheniusFactorABC method) (KattgeKnorrArrhenius method) (SimpleArrhenius method) calculate_beam_extinction_coef() (in module pyrealm.pmodel.two_leaf) calculate_beam_reflectance() (in module pyrealm.pmodel.two_leaf) calculate_c3_discrimination() (CarbonIsotopes method) calculate_c4_discrimination() (CarbonIsotopes method) calculate_c4_discrimination_vonC() (CarbonIsotopes method) calculate_canopy_extinction_coef() (in module pyrealm.pmodel.two_leaf) calculate_canopy_irradiance() (in module pyrealm.pmodel.two_leaf) calculate_canopy_vcmax25() (in module pyrealm.pmodel.two_leaf) calculate_co2_to_ca() (in module pyrealm.pmodel.functions) calculate_crown_areas() (in module pyrealm.demography.tmodel) calculate_crown_fractions() (in module pyrealm.demography.tmodel) calculate_crown_q_m() (in module pyrealm.demography.flora) calculate_crown_r0() (in module pyrealm.demography.tmodel) calculate_crown_radius() (in module pyrealm.demography.crown) calculate_crown_z_max() (in module pyrealm.demography.tmodel) calculate_crown_z_max_proportion() (in module pyrealm.demography.flora) calculate_daily_solar_radiation() (in module pyrealm.core.solar) calculate_day_angle() (in module pyrealm.core.solar) calculate_daytime_net_radiation() (in module pyrealm.core.solar) calculate_dbh_from_height() (in module pyrealm.demography.tmodel) calculate_density_h2o() (in module pyrealm.core.water) calculate_density_h2o_chen() (in module pyrealm.core.water) calculate_density_h2o_fisher() (in module pyrealm.core.water) calculate_density_h2o_jones_harris_eq6() (in module pyrealm.core.water) calculate_density_h2o_jones_harris_eq8() (in module pyrealm.core.water) calculate_density_h2o_kell() (in module pyrealm.core.water) calculate_distance_factor() (in module pyrealm.core.solar) calculate_electron_transport_rate() (in module pyrealm.pmodel.two_leaf) calculate_enthalpy_vaporisation() (in module pyrealm.core.hygro) calculate_equation_of_time() (in module pyrealm.core.solar) calculate_f0() (PhenologyConst method), [1] calculate_fine_root_masses() (in module pyrealm.demography.tmodel) calculate_fine_root_respiration() (in module pyrealm.demography.tmodel) calculate_fine_root_turnover() (in module pyrealm.demography.tmodel) calculate_foliage_masses() (in module pyrealm.demography.tmodel) calculate_foliage_turnover() (in module pyrealm.demography.tmodel) calculate_foliar_respiration() (in module pyrealm.demography.tmodel) calculate_fraction_of_diffuse_radiation() (in module pyrealm.pmodel.two_leaf) calculate_ftemp_inst_rd() (in module pyrealm.pmodel.functions) calculate_gammastar() (in module pyrealm.pmodel.functions) calculate_gpp_topslice() (in module pyrealm.demography.tmodel) calculate_growth_increments() (in module pyrealm.demography.tmodel) calculate_heights() (in module pyrealm.demography.tmodel) calculate_heliocentric_longitudes() (in module pyrealm.core.solar) calculate_jmax25() (in module pyrealm.pmodel.two_leaf) calculate_kattge_knorr_arrhenius_factor() (in module pyrealm.pmodel.functions) calculate_kmm() (in module pyrealm.pmodel.functions) calculate_local_hour_angle() (in module pyrealm.core.solar) calculate_maximum_fapar() (FaparLimitationMethodABC method) (FaparLimitationMethodCai method) (FaparLimitationMethodZhu method) calculate_net_longwave_radiation() (in module pyrealm.core.solar) calculate_net_primary_productivity() (in module pyrealm.demography.tmodel) calculate_net_radiation_crossover_hour_angle() (in module pyrealm.core.solar) calculate_nighttime_net_radiation() (in module pyrealm.core.solar) calculate_ns_star() (in module pyrealm.pmodel.functions) calculate_patm() (in module pyrealm.core.pressure) calculate_ppfd() (in module pyrealm.core.solar) calculate_ppfd_from_tau_rd() (in module pyrealm.core.solar) calculate_psychrometric_constant() (in module pyrealm.core.hygro) calculate_relative_crown_radius_at_z() (in module pyrealm.demography.crown) calculate_reproductive_tissue_mass() (in module pyrealm.demography.tmodel) calculate_reproductive_tissue_respiration() (in module pyrealm.demography.tmodel) calculate_reproductive_tissue_turnover() (in module pyrealm.demography.tmodel) calculate_ru_rv_intermediates() (in module pyrealm.core.solar) calculate_rw_intermediate() (in module pyrealm.core.solar) calculate_sapwood_masses() (in module pyrealm.demography.tmodel) calculate_sapwood_respiration() (in module pyrealm.demography.tmodel) calculate_saturation_vapour_pressure_slope() (in module pyrealm.core.hygro) calculate_simple_arrhenius_factor() (in module pyrealm.pmodel.functions) calculate_soil_moisture() (SplashModel method) calculate_soilmstress_mengoli() (in module pyrealm.pmodel.functions) calculate_soilmstress_stocker() (in module pyrealm.pmodel.functions) calculate_solar_declination() (in module pyrealm.core.solar) calculate_solar_declination_angle() (in module pyrealm.core.solar) calculate_solar_elevation() (in module pyrealm.core.solar) calculate_solar_noon() (in module pyrealm.core.solar)

calculate_specific_heat() (in module pyrealm.core.hygro) calculate_stem_masses() (in module pyrealm.demography.tmodel) calculate_stem_projected_crown_area_at_z() (in module pyrealm.demography.crown) calculate_stem_projected_leaf_area_at_z() (in module pyrealm.demography.crown) calculate_sun_vcmax25() (in module pyrealm.pmodel.two_leaf) calculate_sunlit_beam_irradiance() (in module pyrealm.pmodel.two_leaf) calculate_sunlit_diffuse_irradiance() (in module pyrealm.pmodel.two_leaf) calculate_sunlit_scattered_irradiance() (in module pyrealm.pmodel.two_leaf) calculate_sunset_hour_angle() (in module pyrealm.core.solar) calculate_transmissivity() (in module pyrealm.core.solar) calculate_tree_proportion() (in module pyrealm.pmodel.competition) calculate_viscosity_h2o() (in module pyrealm.core.water) calculate_viscosity_h2o_daubert_danner() (in module pyrealm.core.water) calculate_viscosity_h2o_girifalco() (in module pyrealm.core.water) calculate_viscosity_h2o_huber() (in module pyrealm.core.water) calculate_viscosity_h2o_reid() (in module pyrealm.core.water) calculate_viscosity_h2o_viswanath_natarajan() (in module pyrealm.core.water) calculate_viscosity_h2o_vogel() (in module pyrealm.core.water) calculate_vp_sat() (in module pyrealm.core.hygro) calculate_water_molar_volume() (in module pyrealm.core.water) calculate_whole_crown_gpp() (in module pyrealm.demography.tmodel) Calendar (class in pyrealm.core.calendar) CalendarDay (class in pyrealm.core.calendar) Canopy (class in pyrealm.demography.canopy) canopy_extinction_coef (TwoLeafAssimilation attribute) canopy_gap_fraction (Canopy attribute) canopy_irradiance (TwoLeafIrradiance attribute) CarbonIsotopes (class in pyrealm.pmodel.isotopes) cell_area (CohortCanopyData attribute) (CommunityCanopyData attribute) check() (BoundsChecker method) check_input_shapes() (in module pyrealm.core.utilities) chen_ca (CoreConst attribute), [1] chen_cb (CoreConst attribute), [1] chen_ko (CoreConst attribute), [1] chen_po (CoreConst attribute), [1] chi (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) ci (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) co2 (PModelEnvironment attribute) cohort_absorption (CohortCanopyData attribute) cohort_data (Canopy attribute) cohort_id (Cohorts property) cohort_leaf_area (CommunityCanopyData attribute) CohortCanopyData (class in pyrealm.demography.canopy) CohortMethods (class in pyrealm.demography.core) Cohorts (class in pyrealm.demography.community) CohortSchema (class in pyrealm.demography.community) Community (class in pyrealm.demography.community) community_data (Canopy attribute) (CohortCanopyData attribute) CommunityCanopyData (class in pyrealm.demography.canopy) CommunityCSVDataSchema (class in pyrealm.demography.community) CommunityStructuredDataSchema (class in pyrealm.demography.community) cond (DailyEvapFluxes attribute) ConstantsClass (class in pyrealm.constants) (class in pyrealm.constants.base) convert_gpp_advantage_to_c4_fraction() (in module pyrealm.pmodel.competition) convert_rh_to_vpd() (in module pyrealm.core.hygro) convert_sh_to_vp() (in module pyrealm.core.hygro) convert_sh_to_vpd() (in module pyrealm.core.hygro) convert_to_community_args() (CommunityCSVDataSchema method) (CommunityStructuredDataSchema method) convert_vp_to_vpd() (in module pyrealm.core.hygro) convert_water_mm_to_moles() (in module pyrealm.core.water) convert_water_moles_to_mm() (in module pyrealm.core.water) core_const (PModel attribute) (PModelABC attribute) (PModelEnvironment attribute) (SolarPositions attribute) (SubdailyPModel attribute) core_constants (TwoLeafIrradiance attribute) CoreConst (class in pyrealm.constants) (class in pyrealm.constants.core_const) crossover_hour_angle (DailySolarFluxes attribute) crown_area (StemAllometry attribute) crown_fraction (StemAllometry attribute) crown_profile (Canopy attribute) crown_r0 (StemAllometry attribute) crown_radius (CrownProfile attribute) crown_z_max (StemAllometry attribute) CrownProfile (class in pyrealm.demography.crown)

D

d13C_C3 (C3C4Competition attribute) d13C_C4 (C3C4Competition attribute) d13C_leaf (CarbonIsotopes attribute) d13C_wood (CarbonIsotopes attribute) d14C_leaf (CarbonIsotopes attribute) daily_ppfd (DailySolarFluxes attribute) daily_solar_radiation (DailySolarFluxes attribute) DailyEvapFluxes (class in pyrealm.splash.evap) DailySolarFluxes (class in pyrealm.splash.solar) data_attrs (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) DATASETS (in module pyrealm.core.datasets) date (CalendarDay attribute) dates (Calendar attribute) (SplashModel attribute) datetime (SolarPositions attribute) datetimes (AcclimationModel attribute) (AnnualValueCalculator attribute) day_angle (SolarPositions attribute) day_seconds (CoreConst attribute), [1] days_in_year (Calendar attribute) (CalendarDay attribute) daytime_net_radiation (DailySolarFluxes attribute) DBH dbh (StemAllometry attribute)

dbh_values (Cohorts property) decimal_time (SolarPositions attribute) declination (DailySolarFluxes attribute) (SolarPositions attribute) Delta13C (CarbonIsotopes attribute) Delta13C_C3 (C3C4Competition attribute) Delta13C_C4 (C3C4Competition attribute) Delta13C_simple (CarbonIsotopes attribute) Delta14C (CarbonIsotopes attribute) delta_dbh (StemAllocation attribute) delta_fine_root_mass (StemAllocation attribute) delta_foliage_mass (StemAllocation attribute) delta_stem_mass (StemAllocation attribute) DENSITY_FUNCTION_SIGNATURE (in module pyrealm.core.water) density_jones_harris_kappa (CoreConst attribute), [1] density_jones_harris_rho (CoreConst attribute), [1] density_kell (CoreConst attribute), [1] DENSITY_METHODS (in module pyrealm.core.water) diffuse_extinction_coef (TwoLeafConst attribute) diffuse_irradiance (TwoLeafIrradiance attribute) diffuse_reflectance (TwoLeafConst attribute) direct_beam_extinction_numerator (TwoLeafConst attribute) distance_factor (DailySolarFluxes attribute) drop_cohort_data() (CohortMethods method) drop_cohorts() (Community method) duration_seconds (AnnualValueCalculator attribute) duration_weights (AnnualValueCalculator attribute)

E

econ (DailyEvapFluxes attribute) eet_d (DailyEvapFluxes attribute) elv (SplashModel attribute) endpoint (AnnualValueCalculator attribute) energy_limited (FaparLimitationMethodCai attribute) env (ArrheniusFactorABC attribute) (KattgeKnorrArrhenius attribute) (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) (PModel attribute) (PModelABC attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SimpleArrhenius attribute) (SubdailyPModel attribute)

equation_of_time (SolarPositions attribute) equation_of_time_coef (CoreConst attribute), [1] estimate_aet() (DailyEvapFluxes method) estimate_chi() (OptimalChiABC method) (OptimalChiC4 method) (OptimalChiC4NoGamma method) (OptimalChiC4NoGammaRootzoneStress method) (OptimalChiC4RootzoneStress method) (OptimalChiLavergne20C3 method) (OptimalChiLavergne20C4 method) (OptimalChiPrentice14 method) (OptimalChiPrentice14RootzoneStress method) estimate_daily_water_balance() (SplashModel method) estimate_initial_soil_moisture() (SplashModel method) estimate_isotopic_discrimination() (C3C4Competition method) evaluate_horner_polynomial() (in module pyrealm.core.utilities) evap (SplashModel attribute) exponential_moving_average() (in module pyrealm.core.utilities)

F

f0_coefficients (PhenologyConst attribute), [1] f_g (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) f_j (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) f_v (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) FAPAR fapar (CohortCanopyData attribute) (PModelEnvironment attribute) fapar_limitation (Phenology attribute) FAPAR_LIMITATION_METHOD_CLASS_REGISTRY (in module pyrealm.phenology.fapar_limitation) FaparLimitation (class in pyrealm.phenology.fapar_limitation) FaparLimitationMethodABC (class in pyrealm.phenology.fapar_limitation) FaparLimitationMethodCai (class in pyrealm.phenology.fapar_limitation) FaparLimitationMethodZhu (class in pyrealm.phenology.fapar_limitation) farquhar_a (IsotopesConst attribute), [1] farquhar_b (IsotopesConst attribute), [1] farquhar_b2 (IsotopesConst attribute), [1] farquhar_f (IsotopesConst attribute), [1]

fill_daily_to_subdaily() (AcclimationModel method) fill_method (AcclimationModel attribute) filled_community_area (Canopy attribute) fine_root_mass (StemAllometry attribute) fine_root_respiration (StemAllocation attribute) fine_root_turnover (StemAllocation attribute) fisher_dial_lambda (CoreConst attribute), [1] fisher_dial_Po (CoreConst attribute), [1] fisher_dial_Vinf (CoreConst attribute), [1] fit_perfect_plasticity_approximation() (in module pyrealm.demography.canopy) Flora (class in pyrealm.demography.flora) foliage_mass (StemAllometry attribute) foliar_respiration (StemAllocation attribute) frac_c4 (C3C4Competition attribute) fraction_of_diffuse_radiation (TwoLeafIrradiance attribute) fractional_weights (AnnualValueCalculator attribute) frank_postfrac (IsotopesConst attribute), [1] from_csv() (Community class method) (Flora class method) from_dict() (ConstantsClass class method), [1] from_json() (Community class method) (ConstantsClass class method), [1] (Flora class method) from_pmodel() (FaparLimitation class method) (Phenology class method) from_toml() (Community class method) (Flora class method)

G

gammastar (PModelEnvironment attribute) get_annual_means() (AnnualValueCalculator method) get_annual_totals() (AnnualValueCalculator method) get_common_dims() (in module pyrealm.core.xarray) get_crown_xy() (in module pyrealm.demography.crown) get_daily_means() (AcclimationModel method) get_local_standard_meridian() (SolarPositions method) get_pyrealm_data() (in module pyrealm.core.datasets) get_stem_traits() (Flora method) get_window_values() (AcclimationModel method) GPP gpp (PModel property) (PModelABC property) (SubdailyPModel property) (TwoLeafAssimilation attribute) gpp_adv_c4 (C3C4Competition attribute) gpp_c3_contrib (C3C4Competition attribute)

gpp_c4_contrib (C3C4Competition attribute) gpp_conversion_factor (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) gpp_penalty_factor (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) gpp_to_tc_a (C3C4Const attribute), [1] gpp_to_tc_b (C3C4Const attribute), [1] gpp_to_tc_c (C3C4Const attribute), [1] gpp_topslice (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemAllocation attribute) (StemTraits attribute) gs (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute)

H

h_max (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] heights (Canopy attribute) heskel_rd (PModelConst attribute), [1]

horizontal_leaf_reflectance (TwoLeafConst attribute) hour_angle (SolarPositions attribute) huber_H_i (CoreConst attribute), [1] huber_H_ij (CoreConst attribute), [1] huber_mu_ast (CoreConst attribute), [1] huber_rho_ast (CoreConst attribute), [1] huber_tk_ast (CoreConst attribute), [1]

I

include (AcclimationModel attribute) indexing (AnnualValueCalculator attribute) interval_type (Bounds attribute) irradiance (TwoLeafAssimilation attribute) is_arraytype() (in module pyrealm.core.xarray) is_c4 (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute)

isotopes_const (CarbonIsotopes attribute) IsotopesConst (class in pyrealm.constants) (class in pyrealm.constants.isotope_const) iwue (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute)

J

J (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) J_shade (TwoLeafAssimilation attribute) J_sun (TwoLeafAssimilation attribute) jmax (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) jmax25 (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) jmax25_daily_optimal (SubdailyPModel attribute) jmax25_daily_realised (SubdailyPModel attribute) Jmax25_shade (TwoLeafAssimilation attribute)

Jmax25_sun (TwoLeafAssimilation attribute) jmax25_wullschleger_coef (TwoLeafConst attribute) JMAX_LIMITATION_CLASS_REGISTRY (in module pyrealm.pmodel.jmax_limitation) Jmax_shade (TwoLeafAssimilation attribute) Jmax_sun (TwoLeafAssimilation attribute) jmaxlim (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) JmaxLimitationABC (class in pyrealm.pmodel.jmax_limitation) JmaxLimitationNone (class in pyrealm.pmodel.jmax_limitation) JmaxLimitationSmith19 (class in pyrealm.pmodel.jmax_limitation) JmaxLimitationWang17 (class in pyrealm.pmodel.jmax_limitation) julian_day (Calendar attribute) (CalendarDay attribute)

K

k (PhenologyConst attribute), [1] (PhenologyConstNew attribute) k_c_molmass (CoreConst attribute), [1] k_co (CoreConst attribute), [1] k_CtoK (CoreConst attribute), [1] k_Cw (CoreConst attribute), [1] k_G (CoreConst attribute), [1] k_L (CoreConst attribute), [1] k_Ma (CoreConst attribute), [1] k_Mv (CoreConst attribute), [1] k_pir (CoreConst attribute), [1] k_Po (CoreConst attribute), [1] k_R (CoreConst attribute), [1] k_To (CoreConst attribute), [1]

k_w (CoreConst attribute), [1] k_water_molmass (CoreConst attribute), [1] KattgeKnorrArrhenius (class in pyrealm.pmodel.arrhenius) kmm (PModelEnvironment attribute) kphio (PModel attribute) (PModelABC attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SubdailyPModel attribute) kphio_C3 (PModelConst attribute), [1] kphio_C4 (PModelConst attribute), [1] kWm (SplashModel attribute)

L

LAI lai (CohortCanopyData attribute) (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] lai_max (FaparLimitation attribute) lai_to_gpp_ratio_m (PhenologyMethodZhou attribute) (PhenologyMethodZhu attribute) lambda_ (DailySolarFluxes attribute) lat (SplashModel attribute) latitude (SolarPositions attribute) latitude_rad (SolarPositions attribute) lavergne_2020_c3 (PModelConst attribute), [1]

lavergne_2020_c4 (PModelConst attribute), [1] lavergne_delta13_a (IsotopesConst attribute), [1] lavergne_delta13_b (IsotopesConst attribute), [1] leaf_area_index (CommunityCanopyData attribute) (TwoLeafIrradiance attribute) leaf_scattering_coef (TwoLeafConst attribute) leaf_turnover (StemAllocation attribute) local_standard_meridian (SolarPositions attribute) longitude (SolarPositions attribute) longitude_rad (SolarPositions attribute) lower (Bounds attribute) lue (PModel attribute) (PModelABC attribute) (SubdailyPModel property) lv (DailyEvapFluxes attribute)

M

m (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) magnus_coef (CoreConst attribute), [1] magnus_option (CoreConst attribute), [1] max_stem_height (Canopy attribute) maximum_phi0 (PModelConst attribute), [1] mc (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) method (ArrheniusFactorABC attribute) (FaparLimitationMethodABC attribute) (FaparLimitationMethodCai attribute) (FaparLimitationMethodZhu attribute) (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) (KattgeKnorrArrhenius attribute) (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) (PhenologyMethodABC attribute) (PhenologyMethodZhou attribute) (PhenologyMethodZhu attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SimpleArrhenius attribute) method_arrhenius (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) method_jmaxlim (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) method_kphio (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) method_optchi (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) mj (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute)

mjoc (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) module pyrealm pyrealm.constants pyrealm.core pyrealm.core.bounds pyrealm.core.calendar pyrealm.core.datasets pyrealm.core.hygro pyrealm.core.pressure pyrealm.core.solar pyrealm.core.time_series pyrealm.core.utilities pyrealm.core.water pyrealm.core.xarray pyrealm.demography pyrealm.demography.canopy pyrealm.demography.community pyrealm.demography.core pyrealm.demography.crown pyrealm.demography.flora pyrealm.demography.tmodel pyrealm.phenology pyrealm.phenology.fapar_limitation pyrealm.phenology.phenology pyrealm.pmodel pyrealm.pmodel.acclimation pyrealm.pmodel.arrhenius pyrealm.pmodel.competition pyrealm.pmodel.functions pyrealm.pmodel.isotopes pyrealm.pmodel.jmax_limitation pyrealm.pmodel.optimal_chi pyrealm.pmodel.pmodel pyrealm.pmodel.pmodel_environment pyrealm.pmodel.quantum_yield pyrealm.pmodel.two_leaf pyrealm.splash pyrealm.splash.evap pyrealm.splash.solar pyrealm.splash.splash pyrealm_build_data pyrealm_build_data.bigleaf pyrealm_build_data.community pyrealm_build_data.phenology pyrealm_build_data.rpmodel pyrealm_build_data.sandoval_kphio pyrealm_build_data.splash pyrealm_build_data.subdaily pyrealm_build_data.t_model pyrealm_build_data.two_leaf pyrealm_build_data.uk_data mwr (CoreConst attribute), [1]

N

n (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) n_cohorts (Canopy attribute) n_days (AcclimationModel attribute) n_individuals (CohortCanopyData attribute) n_layers (Canopy attribute) n_obs (AcclimationModel attribute) (AnnualValueCalculator attribute)

n_pfts (Flora attribute) name (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) net_longwave_radiation (DailySolarFluxes attribute) net_longwave_radiation_coef (CoreConst attribute), [1] nighttime_net_radiation (DailySolarFluxes attribute) npp (StemAllocation attribute) ns_star (PModelEnvironment attribute) nu (DailySolarFluxes attribute)

O

observation_dates (AcclimationModel attribute) observation_times (AcclimationModel attribute) omega (JmaxLimitationSmith19 attribute) omega_star (JmaxLimitationSmith19 attribute) optchi (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute)

OPTIMAL_CHI_CLASS_REGISTRY (in module pyrealm.pmodel.optimal_chi) OptimalChiABC (class in pyrealm.pmodel.optimal_chi) OptimalChiC4 (class in pyrealm.pmodel.optimal_chi) OptimalChiC4NoGamma (class in pyrealm.pmodel.optimal_chi) OptimalChiC4NoGammaRootzoneStress (class in pyrealm.pmodel.optimal_chi) OptimalChiC4RootzoneStress (class in pyrealm.pmodel.optimal_chi) OptimalChiLavergne20C3 (class in pyrealm.pmodel.optimal_chi) OptimalChiLavergne20C4 (class in pyrealm.pmodel.optimal_chi) OptimalChiPrentice14 (class in pyrealm.pmodel.optimal_chi) OptimalChiPrentice14RootzoneStress (class in pyrealm.pmodel.optimal_chi) ordinal_date (SolarPositions attribute)

P

p_foliage_for_reproductive_tissue (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) pa (SplashModel attribute) padded_datetimes (AcclimationModel attribute) padding (AcclimationModel attribute) PandasExporter (class in pyrealm.demography.core) par_ext (CohortCanopyData attribute) (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] patm (PModelEnvironment attribute) (TwoLeafIrradiance attribute) peak_quantum_yield() (QuantumYieldSandoval method) pet_d (DailyEvapFluxes attribute) PFT pft_dict (Flora attribute) pft_indices (Flora attribute) pfts (Flora attribute) Phenology (class in pyrealm.phenology.phenology) PHENOLOGY_METHOD_CLASS_REGISTRY (in module pyrealm.phenology.phenology) PhenologyConst (class in pyrealm.constants) (class in pyrealm.constants.phenology_const) PhenologyConstNew (class in pyrealm.constants.phenology_const) PhenologyMethodABC (class in pyrealm.phenology.phenology) PhenologyMethodZhou (class in pyrealm.phenology.phenology) PhenologyMethodZhu (class in pyrealm.phenology.phenology) PlantFunctionalType (class in pyrealm.demography.flora) PlantFunctionalTypeSchema (in module pyrealm.demography.flora) PlantFunctionalTypeStrict (class in pyrealm.demography.flora) PModel (class in pyrealm.pmodel.pmodel) pmodel (TwoLeafAssimilation attribute) pmodel_acclim (SubdailyPModel attribute) pmodel_const (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) (PModel attribute) (PModelABC attribute) (PModelEnvironment attribute) (SubdailyPModel attribute) PModelABC (class in pyrealm.pmodel.pmodel) PModelConst (class in pyrealm.constants) (class in pyrealm.constants.pmodel_const) PModelEnvironment (class in pyrealm.pmodel.pmodel_environment) pn (SplashModel attribute) PPFD ppfd (PModelEnvironment attribute) (TwoLeafIrradiance attribute) previous_realised (SubdailyPModel attribute) projected_crown_area (CrownProfile attribute) projected_crown_radius (CrownProfile property) projected_leaf_area (CohortCanopyData attribute) (CrownProfile attribute) projected_leaf_radius (CrownProfile property) psy (DailyEvapFluxes attribute) pw (DailyEvapFluxes attribute) pyrealm module pyrealm.constants module pyrealm.core module pyrealm.core.bounds module pyrealm.core.calendar module pyrealm.core.datasets module pyrealm.core.hygro module pyrealm.core.pressure module

pyrealm.core.solar module pyrealm.core.time_series module pyrealm.core.utilities module pyrealm.core.water module pyrealm.core.xarray module pyrealm.demography module pyrealm.demography.canopy module pyrealm.demography.community module pyrealm.demography.core module pyrealm.demography.crown module pyrealm.demography.flora module pyrealm.demography.tmodel module pyrealm.phenology module pyrealm.phenology.fapar_limitation module pyrealm.phenology.phenology module pyrealm.pmodel module pyrealm.pmodel.acclimation module pyrealm.pmodel.arrhenius module pyrealm.pmodel.competition module pyrealm.pmodel.functions module pyrealm.pmodel.isotopes module pyrealm.pmodel.jmax_limitation module pyrealm.pmodel.optimal_chi module pyrealm.pmodel.pmodel module pyrealm.pmodel.pmodel_environment module pyrealm.pmodel.quantum_yield module pyrealm.pmodel.two_leaf module pyrealm.splash module pyrealm.splash.evap module pyrealm.splash.solar module pyrealm.splash.splash module pyrealm_build_data module pyrealm_build_data.bigleaf module pyrealm_build_data.community module pyrealm_build_data.phenology module pyrealm_build_data.rpmodel module pyrealm_build_data.sandoval_kphio module pyrealm_build_data.splash module pyrealm_build_data.subdaily module pyrealm_build_data.t_model module pyrealm_build_data.two_leaf module pyrealm_build_data.uk_data module

Q

q_m (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute)

QUANTUM_YIELD_CLASS_REGISTRY (in module pyrealm.pmodel.quantum_yield) QuantumYieldABC (class in pyrealm.pmodel.quantum_yield) QuantumYieldFixed (class in pyrealm.pmodel.quantum_yield) QuantumYieldSandoval (class in pyrealm.pmodel.quantum_yield) QuantumYieldTemperature (class in pyrealm.pmodel.quantum_yield)

R

reference_kphio (PModel attribute) (PModelABC attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SubdailyPModel attribute) register_density_method() (in module pyrealm.core.water) register_viscosity_method() (in module pyrealm.core.water) relative_crown_radius (CrownProfile attribute) remove_gpp_penalty_factor() (PModel method) (PModelABC method) (SubdailyPModel method) reproductive_tissue_mass (StemAllometry attribute) reproductive_tissue_respiration (StemAllocation attribute) reproductive_tissue_turnover (StemAllocation attribute) required_coefficients (ArrheniusFactorABC attribute) (KattgeKnorrArrhenius attribute) (SimpleArrhenius attribute) required_env_variables (ArrheniusFactorABC attribute) (KattgeKnorrArrhenius attribute) (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SimpleArrhenius attribute)

requires (FaparLimitationMethodABC attribute) (FaparLimitationMethodCai attribute) (FaparLimitationMethodZhu attribute) (PhenologyMethodABC attribute) (PhenologyMethodZhou attribute) (PhenologyMethodZhu attribute) resp_f (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] resp_r (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] resp_rt (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) resp_s (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] rho_s (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] ru (DailySolarFluxes attribute) rv (DailySolarFluxes attribute) rw (DailySolarFluxes attribute) rx (DailyEvapFluxes attribute)

S

sample_datetimes (AcclimationModel attribute) sample_datetimes_max (AcclimationModel attribute) sample_datetimes_mean (AcclimationModel attribute) sandoval_kinetics (PModelConst attribute), [1] sandoval_peak_phio (PModelConst attribute), [1] sapwood_mass (StemAllometry attribute) sapwood_respiration (StemAllocation attribute) sat (DailyEvapFluxes attribute) scattered_beam_extinction_coef (TwoLeafIrradiance attribute) scattered_beam_extinction_numerator (TwoLeafConst attribute) set_beta() (OptimalChiABC method) (OptimalChiC4 method) (OptimalChiC4NoGamma method) (OptimalChiC4NoGammaRootzoneStress method) (OptimalChiC4RootzoneStress method) (OptimalChiLavergne20C3 method) (OptimalChiLavergne20C4 method) (OptimalChiPrentice14 method) (OptimalChiPrentice14RootzoneStress method) set_include() (AcclimationModel method) set_nearest() (AcclimationModel method) set_window() (AcclimationModel method) set_z_and_f0() (FaparLimitationMethodABC method) (FaparLimitationMethodCai method) (FaparLimitationMethodZhu method) sf (SplashModel attribute) shaded_absorbed_irradiance (TwoLeafIrradiance attribute) shape (AnnualValueCalculator attribute) (CarbonIsotopes attribute) (JmaxLimitationABC attribute) (JmaxLimitationNone attribute) (JmaxLimitationSmith19 attribute) (JmaxLimitationWang17 attribute) (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute) (PModel attribute) (PModelABC attribute) (PModelEnvironment attribute) (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute) (SplashModel attribute) (SubdailyPModel attribute) shortwave_albedo (CoreConst attribute), [1] sigma (PhenologyConst attribute), [1] SimpleArrhenius (class in pyrealm.pmodel.arrhenius) sla (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] smith19_coef (PModelConst attribute), [1]

soilmstress_mengoli (PModelConst attribute), [1] soilmstress_stocker (PModelConst attribute), [1] solar (SplashModel attribute) solar_constant (CoreConst attribute), [1] solar_eccentricity (CoreConst attribute), [1] solar_elevation (SolarPositions attribute) (TwoLeafIrradiance attribute) solar_noon (SolarPositions attribute) solar_obliquity (CoreConst attribute), [1] solar_obscurity_angle (TwoLeafConst attribute) solar_perihelion (CoreConst attribute), [1] SolarPositions (class in pyrealm.core.solar) solve_canopy_area_filling_height() (in module pyrealm.demography.canopy) solver_tolerance (Canopy attribute) spacing (AcclimationModel attribute) SplashModel (class in pyrealm.splash.splash) stem_allometry (CrownProfile attribute) (StemAllocation attribute) stem_height (StemAllometry attribute) stem_leaf_area (CohortCanopyData attribute) stem_mass (StemAllometry attribute) stem_traits (CrownProfile attribute) (StemAllocation attribute) (StemAllometry attribute) StemAllocation (class in pyrealm.demography.tmodel) StemAllometry (class in pyrealm.demography.tmodel) StemTraits (class in pyrealm.demography.flora) SubdailyPModel (class in pyrealm.pmodel.pmodel) subset_mask (AnnualValueCalculator attribute) subset_mask_by_year (AnnualValueCalculator attribute) summarize() (C3C4Competition method) (CarbonIsotopes method) (FaparLimitation method) (JmaxLimitationABC method) (JmaxLimitationNone method) (JmaxLimitationSmith19 method) (JmaxLimitationWang17 method) (OptimalChiABC method) (OptimalChiC4 method) (OptimalChiC4NoGamma method) (OptimalChiC4NoGammaRootzoneStress method) (OptimalChiC4RootzoneStress method) (OptimalChiLavergne20C3 method) (OptimalChiLavergne20C4 method) (OptimalChiPrentice14 method) (OptimalChiPrentice14RootzoneStress method) (PModel method) (PModelABC method) (PModelEnvironment method) (QuantumYieldABC method) (QuantumYieldFixed method) (QuantumYieldSandoval method) (QuantumYieldTemperature method) (SubdailyPModel method) summarize_attrs() (in module pyrealm.core.utilities) sunlit_absorbed_irradiance (TwoLeafIrradiance attribute) sunlit_beam_irradiance (TwoLeafIrradiance attribute) sunlit_diffuse_irradiance (TwoLeafIrradiance attribute) sunlit_scattered_irradiance (TwoLeafIrradiance attribute) sunset_hour_angle (DailySolarFluxes attribute) swdown_to_ppfd_factor (CoreConst attribute), [1]

T

tau_f (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] tau_r (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1] tau_rt (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) tc (PModelEnvironment attribute) (SplashModel attribute) tc_ref (PModelConst attribute), [1]

tk (PModelEnvironment attribute) tk_ref (PModelConst attribute), [1] TModelTraits (class in pyrealm.constants) (class in pyrealm.constants.tmodel_const) to_dict() (ConstantsClass method), [1] to_json() (ConstantsClass method), [1] to_pandas() (PandasExporter method) to_subdaily() (PModel method) topslice_whole_crown_gpp (StemAllocation attribute) transmission_profile (CommunityCanopyData attribute) transmission_to_ground (CommunityCanopyData attribute) transmissivity (DailySolarFluxes attribute) transmissivity_coef (CoreConst attribute), [1] two_leaf_constants (TwoLeafIrradiance attribute) TwoLeafAssimilation (class in pyrealm.pmodel.two_leaf) TwoLeafConst (class in pyrealm.constants.two_leaf) TwoLeafIrradiance (class in pyrealm.pmodel.two_leaf)

U

unit (Bounds attribute) update() (BoundsChecker method) update_point (AcclimationModel attribute) upper (Bounds attribute)

use_c4 (QuantumYieldABC attribute) (QuantumYieldFixed attribute) (QuantumYieldSandoval attribute) (QuantumYieldTemperature attribute)

V

validate (CrownProfile attribute) (StemAllocation attribute) (StemAllometry attribute) (StemTraits attribute) validate_consistent_cell_data() (CommunityCSVDataSchema method) var_name (Bounds attribute) vcmax (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) vcmax25 (PModel attribute) (PModelABC attribute) (SubdailyPModel attribute) Vcmax25_canopy (TwoLeafAssimilation attribute) vcmax25_daily_optimal (SubdailyPModel attribute) vcmax25_daily_realised (SubdailyPModel attribute) Vcmax25_shade (TwoLeafAssimilation attribute)

Vcmax25_sun (TwoLeafAssimilation attribute) vcmax_lloyd_coef (TwoLeafConst attribute) Vcmax_shade (TwoLeafAssimilation attribute) Vcmax_sun (TwoLeafAssimilation attribute) viscosity_daubert_danner (CoreConst attribute), [1] VISCOSITY_FUNCTION_SIGNATURE (in module pyrealm.core.water) viscosity_girifalco (CoreConst attribute), [1] VISCOSITY_METHODS (in module pyrealm.core.water) viscosity_reid (CoreConst attribute), [1] viscosity_viswanath_natarajan (CoreConst attribute), [1] viscosity_vogel (CoreConst attribute), [1] visible_light_albedo (CoreConst attribute), [1] vonCaemmerer_b4 (IsotopesConst attribute), [1] vonCaemmerer_phi (IsotopesConst attribute), [1] vonCaemmerer_s (IsotopesConst attribute), [1] vpd (PModelEnvironment attribute)

W

wang17_c (PModelConst attribute), [1] water_density_method (CoreConst attribute), [1]

water_viscosity_method (CoreConst attribute), [1] whole_crown_gpp (StemAllocation attribute)

X

xarray_inputs() (in module pyrealm.core.xarray) xi (OptimalChiABC attribute) (OptimalChiC4 attribute) (OptimalChiC4NoGamma attribute) (OptimalChiC4NoGammaRootzoneStress attribute) (OptimalChiC4RootzoneStress attribute) (OptimalChiLavergne20C3 attribute) (OptimalChiLavergne20C4 attribute) (OptimalChiPrentice14 attribute) (OptimalChiPrentice14RootzoneStress attribute)

xi_daily_optimal (SubdailyPModel attribute) xi_daily_realised (SubdailyPModel attribute)

Y

year (Calendar attribute) (CalendarDay attribute) year_completeness (AnnualValueCalculator attribute) year_n_days (AnnualValueCalculator attribute) year_n_growing_days (AnnualValueCalculator attribute) year_total_seconds (AnnualValueCalculator attribute)

years (AnnualValueCalculator attribute) (FaparLimitation attribute) yld (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1]

Z

z (CrownProfile attribute) (PhenologyConst attribute), [1] z_max_prop (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) zeta (Flora attribute) (PlantFunctionalType attribute) (PlantFunctionalTypeStrict attribute) (StemTraits attribute) (TModelTraits attribute), [1]

zhou_alpha (PhenologyConstNew attribute) zhu_A0_quantile (PhenologyConstNew attribute) zhu_budyko (PhenologyConstNew attribute) zhu_f0 (PhenologyConstNew attribute) zhu_lagcoef (PhenologyConstNew attribute) zhu_lagmax (PhenologyConstNew attribute) zhu_min_a0 (PhenologyConstNew attribute) zhu_z (PhenologyConstNew attribute)