Users
pyrealm
prentice14
c4
c4_no_gamma
lavergne20_c3
lavergne20_c4
calculate_soilmstress_stocker()
calculate_soilmstress_mengoli()
splash
zhou
zhu
API
constants
C3C4Const
C3C4Const.adv_to_frac_k
C3C4Const.adv_to_frac_q
C3C4Const.c3_forest_closure_gpp
C3C4Const.gpp_to_tc_a
C3C4Const.gpp_to_tc_b
C3C4Const.gpp_to_tc_c
ConstantsClass
ConstantsClass.from_dict()
ConstantsClass.from_json()
ConstantsClass.to_dict()
ConstantsClass.to_json()
CoreConst
CoreConst.chen_ca
CoreConst.chen_cb
CoreConst.chen_ko
CoreConst.chen_po
CoreConst.day_seconds
CoreConst.density_jones_harris_kappa
CoreConst.density_jones_harris_rho
CoreConst.density_kell
CoreConst.equation_of_time_coef
CoreConst.fisher_dial_Po
CoreConst.fisher_dial_Vinf
CoreConst.fisher_dial_lambda
CoreConst.huber_H_i
CoreConst.huber_H_ij
CoreConst.huber_mu_ast
CoreConst.huber_rho_ast
CoreConst.huber_tk_ast
CoreConst.k_CtoK
CoreConst.k_Cw
CoreConst.k_G
CoreConst.k_L
CoreConst.k_Ma
CoreConst.k_Mv
CoreConst.k_Po
CoreConst.k_R
CoreConst.k_To
CoreConst.k_c_molmass
CoreConst.k_co
CoreConst.k_pir
CoreConst.k_w
CoreConst.k_water_molmass
CoreConst.magnus_coef
CoreConst.magnus_option
CoreConst.mwr
CoreConst.net_longwave_radiation_coef
CoreConst.shortwave_albedo
CoreConst.solar_constant
CoreConst.solar_eccentricity
CoreConst.solar_obliquity
CoreConst.solar_perihelion
CoreConst.swdown_to_ppfd_factor
CoreConst.transmissivity_coef
CoreConst.viscosity_daubert_danner
CoreConst.viscosity_girifalco
CoreConst.viscosity_reid
CoreConst.viscosity_viswanath_natarajan
CoreConst.viscosity_vogel
CoreConst.visible_light_albedo
CoreConst.water_density_method
CoreConst.water_viscosity_method
IsotopesConst
IsotopesConst.badeck_postfrac
IsotopesConst.farquhar_a
IsotopesConst.farquhar_b
IsotopesConst.farquhar_b2
IsotopesConst.farquhar_f
IsotopesConst.frank_postfrac
IsotopesConst.lavergne_delta13_a
IsotopesConst.lavergne_delta13_b
IsotopesConst.vonCaemmerer_b4
IsotopesConst.vonCaemmerer_phi
IsotopesConst.vonCaemmerer_s
PModelConst
PModelConst.arrhenius_jmax
PModelConst.arrhenius_vcmax
PModelConst.bernacchi_gs
PModelConst.bernacchi_kmm
PModelConst.beta_cost_ratio_c3
PModelConst.beta_cost_ratio_c4
PModelConst.heskel_rd
PModelConst.kphio_C3
PModelConst.kphio_C4
PModelConst.lavergne_2020_c3
PModelConst.lavergne_2020_c4
PModelConst.maximum_phi0
PModelConst.sandoval_kinetics
PModelConst.sandoval_peak_phio
PModelConst.smith19_coef
PModelConst.soilmstress_mengoli
PModelConst.soilmstress_stocker
PModelConst.tc_ref
PModelConst.tk_ref
PModelConst.wang17_c
PhenologyConst
PhenologyConst.calculate_f0()
PhenologyConst.f0_coefficients
PhenologyConst.k
PhenologyConst.sigma
PhenologyConst.z
TModelTraits
TModelTraits.a_hd
TModelTraits.ca_ratio
TModelTraits.h_max
TModelTraits.lai
TModelTraits.par_ext
TModelTraits.resp_f
TModelTraits.resp_r
TModelTraits.resp_s
TModelTraits.rho_s
TModelTraits.sla
TModelTraits.tau_f
TModelTraits.tau_r
TModelTraits.yld
TModelTraits.zeta
TwoLeafConst
TwoLeafConst.atmos_transmission_par
TwoLeafConst.atmospheric_scattering_coef
TwoLeafConst.diffuse_extinction_coef
TwoLeafConst.diffuse_reflectance
TwoLeafConst.direct_beam_extinction_numerator
TwoLeafConst.horizontal_leaf_reflectance
TwoLeafConst.jmax25_wullschleger_coef
TwoLeafConst.leaf_scattering_coef
TwoLeafConst.scattered_beam_extinction_numerator
TwoLeafConst.solar_obscurity_angle
TwoLeafConst.vcmax_lloyd_coef
PhenologyConstNew
PhenologyConstNew.cai_f0_coefficients
PhenologyConstNew.cai_sigma
PhenologyConstNew.cai_z
PhenologyConstNew.k
PhenologyConstNew.zhou_alpha
PhenologyConstNew.zhu_A0_quantile
PhenologyConstNew.zhu_budyko
PhenologyConstNew.zhu_f0
PhenologyConstNew.zhu_lagcoef
PhenologyConstNew.zhu_lagmax
PhenologyConstNew.zhu_min_a0
PhenologyConstNew.zhu_z
core
bounds
Bounds
Bounds.interval_type
Bounds.lower
Bounds.unit
Bounds.upper
Bounds.var_name
BoundsChecker
BoundsChecker.check()
BoundsChecker.update()
calendar
Calendar
Calendar.dates
Calendar.days_in_year
Calendar.julian_day
Calendar.year
CalendarDay
CalendarDay.date
CalendarDay.days_in_year
CalendarDay.julian_day
CalendarDay.year
datasets
_populate_pooch_registry()
get_pyrealm_data()
DATASETS
hygro
calculate_enthalpy_vaporisation()
calculate_psychrometric_constant()
calculate_saturation_vapour_pressure_slope()
calculate_specific_heat()
calculate_vp_sat()
convert_rh_to_vpd()
convert_sh_to_vp()
convert_sh_to_vpd()
convert_vp_to_vpd()
pressure
calculate_patm()
solar
SolarPositions
SolarPositions.get_local_standard_meridian()
SolarPositions.core_const
SolarPositions.datetime
SolarPositions.day_angle
SolarPositions.decimal_time
SolarPositions.declination
SolarPositions.equation_of_time
SolarPositions.hour_angle
SolarPositions.latitude
SolarPositions.latitude_rad
SolarPositions.local_standard_meridian
SolarPositions.longitude
SolarPositions.longitude_rad
SolarPositions.ordinal_date
SolarPositions.solar_elevation
SolarPositions.solar_noon
calculate_daily_solar_radiation()
calculate_day_angle()
calculate_daytime_net_radiation()
calculate_distance_factor()
calculate_equation_of_time()
calculate_heliocentric_longitudes()
calculate_local_hour_angle()
calculate_net_longwave_radiation()
calculate_net_radiation_crossover_hour_angle()
calculate_nighttime_net_radiation()
calculate_ppfd()
calculate_ppfd_from_tau_rd()
calculate_ru_rv_intermediates()
calculate_rw_intermediate()
calculate_solar_declination()
calculate_solar_declination_angle()
calculate_solar_elevation()
calculate_solar_noon()
calculate_sunset_hour_angle()
calculate_transmissivity()
time_series
AnnualValueCalculator
AnnualValueCalculator.get_annual_means()
AnnualValueCalculator.get_annual_totals()
AnnualValueCalculator.datetimes
AnnualValueCalculator.duration_seconds
AnnualValueCalculator.duration_weights
AnnualValueCalculator.endpoint
AnnualValueCalculator.fractional_weights
AnnualValueCalculator.indexing
AnnualValueCalculator.n_obs
AnnualValueCalculator.shape
AnnualValueCalculator.subset_mask
AnnualValueCalculator.subset_mask_by_year
AnnualValueCalculator.year_completeness
AnnualValueCalculator.year_n_days
AnnualValueCalculator.year_n_growing_days
AnnualValueCalculator.year_total_seconds
AnnualValueCalculator.years
broadcast_time()
utilities
check_input_shapes()
evaluate_horner_polynomial()
exponential_moving_average()
summarize_attrs()
water
calculate_density_h2o()
calculate_density_h2o_chen()
calculate_density_h2o_fisher()
calculate_density_h2o_jones_harris_eq6()
calculate_density_h2o_jones_harris_eq8()
calculate_density_h2o_kell()
calculate_viscosity_h2o()
calculate_viscosity_h2o_daubert_danner()
calculate_viscosity_h2o_girifalco()
calculate_viscosity_h2o_huber()
calculate_viscosity_h2o_reid()
calculate_viscosity_h2o_viswanath_natarajan()
calculate_viscosity_h2o_vogel()
calculate_water_molar_volume()
convert_water_mm_to_moles()
convert_water_moles_to_mm()
register_density_method()
register_viscosity_method()
DENSITY_FUNCTION_SIGNATURE
DENSITY_METHODS
VISCOSITY_FUNCTION_SIGNATURE
VISCOSITY_METHODS
xarray
get_common_dims()
is_arraytype()
xarray_inputs()
ArrayType
demography
CohortMethods
CohortMethods.add_cohort_data()
CohortMethods.drop_cohort_data()
PandasExporter
PandasExporter.to_pandas()
flora
Flora
Flora.from_csv()
Flora.from_json()
Flora.from_toml()
Flora.get_stem_traits()
Flora.a_hd
Flora.ca_ratio
Flora.f_g
Flora.gpp_topslice
Flora.h_max
Flora.lai
Flora.m
Flora.n
Flora.n_pfts
Flora.name
Flora.p_foliage_for_reproductive_tissue
Flora.par_ext
Flora.pft_dict
Flora.pft_indices
Flora.pfts
Flora.q_m
Flora.resp_f
Flora.resp_r
Flora.resp_rt
Flora.resp_s
Flora.rho_s
Flora.sla
Flora.tau_f
Flora.tau_r
Flora.tau_rt
Flora.yld
Flora.z_max_prop
Flora.zeta
PlantFunctionalType
PlantFunctionalType.a_hd
PlantFunctionalType.ca_ratio
PlantFunctionalType.f_g
PlantFunctionalType.gpp_topslice
PlantFunctionalType.h_max
PlantFunctionalType.lai
PlantFunctionalType.m
PlantFunctionalType.n
PlantFunctionalType.name
PlantFunctionalType.p_foliage_for_reproductive_tissue
PlantFunctionalType.par_ext
PlantFunctionalType.q_m
PlantFunctionalType.resp_f
PlantFunctionalType.resp_r
PlantFunctionalType.resp_rt
PlantFunctionalType.resp_s
PlantFunctionalType.rho_s
PlantFunctionalType.sla
PlantFunctionalType.tau_f
PlantFunctionalType.tau_r
PlantFunctionalType.tau_rt
PlantFunctionalType.yld
PlantFunctionalType.z_max_prop
PlantFunctionalType.zeta
PlantFunctionalTypeSchema
PlantFunctionalTypeStrict
PlantFunctionalTypeStrict.a_hd
PlantFunctionalTypeStrict.ca_ratio
PlantFunctionalTypeStrict.f_g
PlantFunctionalTypeStrict.gpp_topslice
PlantFunctionalTypeStrict.h_max
PlantFunctionalTypeStrict.lai
PlantFunctionalTypeStrict.m
PlantFunctionalTypeStrict.n
PlantFunctionalTypeStrict.name
PlantFunctionalTypeStrict.p_foliage_for_reproductive_tissue
PlantFunctionalTypeStrict.par_ext
PlantFunctionalTypeStrict.q_m
PlantFunctionalTypeStrict.resp_f
PlantFunctionalTypeStrict.resp_r
PlantFunctionalTypeStrict.resp_rt
PlantFunctionalTypeStrict.resp_s
PlantFunctionalTypeStrict.rho_s
PlantFunctionalTypeStrict.sla
PlantFunctionalTypeStrict.tau_f
PlantFunctionalTypeStrict.tau_r
PlantFunctionalTypeStrict.tau_rt
PlantFunctionalTypeStrict.yld
PlantFunctionalTypeStrict.z_max_prop
PlantFunctionalTypeStrict.zeta
StemTraits
StemTraits.a_hd
StemTraits.ca_ratio
StemTraits.f_g
StemTraits.gpp_topslice
StemTraits.h_max
StemTraits.lai
StemTraits.m
StemTraits.n
StemTraits.name
StemTraits.p_foliage_for_reproductive_tissue
StemTraits.par_ext
StemTraits.q_m
StemTraits.resp_f
StemTraits.resp_r
StemTraits.resp_rt
StemTraits.resp_s
StemTraits.rho_s
StemTraits.sla
StemTraits.tau_f
StemTraits.tau_r
StemTraits.tau_rt
StemTraits.validate
StemTraits.yld
StemTraits.z_max_prop
StemTraits.zeta
calculate_crown_q_m()
calculate_crown_z_max_proportion()
tmodel
StemAllocation
StemAllocation.delta_dbh
StemAllocation.delta_fine_root_mass
StemAllocation.delta_foliage_mass
StemAllocation.delta_stem_mass
StemAllocation.fine_root_respiration
StemAllocation.fine_root_turnover
StemAllocation.foliar_respiration
StemAllocation.gpp_topslice
StemAllocation.leaf_turnover
StemAllocation.npp
StemAllocation.reproductive_tissue_respiration
StemAllocation.reproductive_tissue_turnover
StemAllocation.sapwood_respiration
StemAllocation.stem_allometry
StemAllocation.stem_traits
StemAllocation.topslice_whole_crown_gpp
StemAllocation.validate
StemAllocation.whole_crown_gpp
StemAllometry
StemAllometry.at_dbh
StemAllometry.crown_area
StemAllometry.crown_fraction
StemAllometry.crown_r0
StemAllometry.crown_z_max
StemAllometry.dbh
StemAllometry.fine_root_mass
StemAllometry.foliage_mass
StemAllometry.reproductive_tissue_mass
StemAllometry.sapwood_mass
StemAllometry.stem_height
StemAllometry.stem_mass
StemAllometry.stem_traits
StemAllometry.validate
calculate_crown_areas()
calculate_crown_fractions()
calculate_crown_r0()
calculate_crown_z_max()
calculate_dbh_from_height()
calculate_fine_root_masses()
calculate_fine_root_respiration()
calculate_fine_root_turnover()
calculate_foliage_masses()
calculate_foliage_turnover()
calculate_foliar_respiration()
calculate_gpp_topslice()
calculate_growth_increments()
calculate_heights()
calculate_net_primary_productivity()
calculate_reproductive_tissue_mass()
calculate_reproductive_tissue_respiration()
calculate_reproductive_tissue_turnover()
calculate_sapwood_masses()
calculate_sapwood_respiration()
calculate_stem_masses()
calculate_whole_crown_gpp()
crown
CrownProfile
CrownProfile.crown_radius
CrownProfile.projected_crown_area
CrownProfile.projected_crown_radius
CrownProfile.projected_leaf_area
CrownProfile.projected_leaf_radius
CrownProfile.relative_crown_radius
CrownProfile.stem_allometry
CrownProfile.stem_traits
CrownProfile.validate
CrownProfile.z
calculate_crown_radius()
calculate_relative_crown_radius_at_z()
calculate_stem_projected_crown_area_at_z()
calculate_stem_projected_leaf_area_at_z()
get_crown_xy()
community
CohortSchema
Cohorts
Cohorts.cohort_id
Cohorts.dbh_values
Community
Community.add_cohorts()
Community.drop_cohorts()
Community.from_csv()
Community.from_json()
Community.from_toml()
CommunityCSVDataSchema
CommunityCSVDataSchema.convert_to_community_args()
CommunityCSVDataSchema.validate_consistent_cell_data()
CommunityStructuredDataSchema
CommunityStructuredDataSchema.convert_to_community_args()
canopy
Canopy
Canopy.canopy_gap_fraction
Canopy.cohort_data
Canopy.community_data
Canopy.crown_profile
Canopy.filled_community_area
Canopy.heights
Canopy.max_stem_height
Canopy.n_cohorts
Canopy.n_layers
Canopy.solver_tolerance
CohortCanopyData
CohortCanopyData.cell_area
CohortCanopyData.cohort_absorption
CohortCanopyData.community_data
CohortCanopyData.fapar
CohortCanopyData.lai
CohortCanopyData.n_individuals
CohortCanopyData.par_ext
CohortCanopyData.projected_leaf_area
CohortCanopyData.stem_leaf_area
CommunityCanopyData
CommunityCanopyData.absorption
CommunityCanopyData.average_layer_absorption
CommunityCanopyData.average_layer_fapar
CommunityCanopyData.average_layer_lai
CommunityCanopyData.cell_area
CommunityCanopyData.cohort_leaf_area
CommunityCanopyData.leaf_area_index
CommunityCanopyData.transmission_profile
CommunityCanopyData.transmission_to_ground
fit_perfect_plasticity_approximation()
solve_canopy_area_filling_height()
phenology
FaparLimitation
FaparLimitation.from_pmodel()
FaparLimitation.summarize()
FaparLimitation.annual_growing_season_length
FaparLimitation.annual_mean_ca
FaparLimitation.annual_mean_chi
FaparLimitation.annual_mean_vpd
FaparLimitation.annual_total_potential_gpp
FaparLimitation.annual_total_precip
FaparLimitation.lai_max
FaparLimitation.years
FaparLimitationMethodABC
FaparLimitationMethodABC.calculate_maximum_fapar()
FaparLimitationMethodABC.set_z_and_f0()
FaparLimitationMethodABC.attrs
FaparLimitationMethodABC.method
FaparLimitationMethodABC.requires
FaparLimitationMethodCai
FaparLimitationMethodCai.calculate_maximum_fapar()
FaparLimitationMethodCai.set_z_and_f0()
FaparLimitationMethodCai.attrs
FaparLimitationMethodCai.energy_limited
FaparLimitationMethodCai.method
FaparLimitationMethodCai.requires
FaparLimitationMethodZhu
FaparLimitationMethodZhu.calculate_maximum_fapar()
FaparLimitationMethodZhu.set_z_and_f0()
FaparLimitationMethodZhu.attrs
FaparLimitationMethodZhu.method
FaparLimitationMethodZhu.requires
FAPAR_LIMITATION_METHOD_CLASS_REGISTRY
Phenology
Phenology.from_pmodel()
Phenology.fapar_limitation
PhenologyMethodABC
PhenologyMethodABC.attrs
PhenologyMethodABC.method
PhenologyMethodABC.requires
PhenologyMethodZhou
PhenologyMethodZhou.attrs
PhenologyMethodZhou.lai_to_gpp_ratio_m
PhenologyMethodZhou.method
PhenologyMethodZhou.requires
PhenologyMethodZhu
PhenologyMethodZhu.attrs
PhenologyMethodZhu.lai_to_gpp_ratio_m
PhenologyMethodZhu.method
PhenologyMethodZhu.requires
PHENOLOGY_METHOD_CLASS_REGISTRY
pmodel
pmodel_environment
PModelEnvironment
PModelEnvironment.summarize()
PModelEnvironment.ca
PModelEnvironment.co2
PModelEnvironment.core_const
PModelEnvironment.fapar
PModelEnvironment.gammastar
PModelEnvironment.kmm
PModelEnvironment.ns_star
PModelEnvironment.patm
PModelEnvironment.pmodel_const
PModelEnvironment.ppfd
PModelEnvironment.shape
PModelEnvironment.tc
PModelEnvironment.tk
PModelEnvironment.vpd
jmax_limitation
JmaxLimitationABC
JmaxLimitationABC._calculate_limitation_terms()
JmaxLimitationABC.summarize()
JmaxLimitationABC.data_attrs
JmaxLimitationABC.f_j
JmaxLimitationABC.f_v
JmaxLimitationABC.method
JmaxLimitationABC.optchi
JmaxLimitationABC.pmodel_const
JmaxLimitationABC.shape
JmaxLimitationNone
JmaxLimitationNone._calculate_limitation_terms()
JmaxLimitationNone.summarize()
JmaxLimitationNone.data_attrs
JmaxLimitationNone.f_j
JmaxLimitationNone.f_v
JmaxLimitationNone.method
JmaxLimitationNone.optchi
JmaxLimitationNone.pmodel_const
JmaxLimitationNone.shape
JmaxLimitationSmith19
JmaxLimitationSmith19._calculate_limitation_terms()
JmaxLimitationSmith19.summarize()
JmaxLimitationSmith19.data_attrs
JmaxLimitationSmith19.f_j
JmaxLimitationSmith19.f_v
JmaxLimitationSmith19.method
JmaxLimitationSmith19.omega
JmaxLimitationSmith19.omega_star
JmaxLimitationSmith19.optchi
JmaxLimitationSmith19.pmodel_const
JmaxLimitationSmith19.shape
JmaxLimitationWang17
JmaxLimitationWang17._calculate_limitation_terms()
JmaxLimitationWang17.summarize()
JmaxLimitationWang17.data_attrs
JmaxLimitationWang17.f_j
JmaxLimitationWang17.f_v
JmaxLimitationWang17.method
JmaxLimitationWang17.optchi
JmaxLimitationWang17.pmodel_const
JmaxLimitationWang17.shape
JMAX_LIMITATION_CLASS_REGISTRY
optimal_chi
OptimalChiABC
OptimalChiABC.estimate_chi()
OptimalChiABC.set_beta()
OptimalChiABC.summarize()
OptimalChiABC.beta
OptimalChiABC.chi
OptimalChiABC.ci
OptimalChiABC.env
OptimalChiABC.is_c4
OptimalChiABC.mc
OptimalChiABC.method
OptimalChiABC.mj
OptimalChiABC.mjoc
OptimalChiABC.pmodel_const
OptimalChiABC.required_env_variables
OptimalChiABC.shape
OptimalChiABC.xi
OptimalChiC4
OptimalChiC4.estimate_chi()
OptimalChiC4.set_beta()
OptimalChiC4.summarize()
OptimalChiC4.beta
OptimalChiC4.chi
OptimalChiC4.ci
OptimalChiC4.env
OptimalChiC4.is_c4
OptimalChiC4.mc
OptimalChiC4.method
OptimalChiC4.mj
OptimalChiC4.mjoc
OptimalChiC4.pmodel_const
OptimalChiC4.required_env_variables
OptimalChiC4.shape
OptimalChiC4.xi
OptimalChiC4NoGamma
OptimalChiC4NoGamma.estimate_chi()
OptimalChiC4NoGamma.set_beta()
OptimalChiC4NoGamma.summarize()
OptimalChiC4NoGamma.beta
OptimalChiC4NoGamma.chi
OptimalChiC4NoGamma.ci
OptimalChiC4NoGamma.env
OptimalChiC4NoGamma.is_c4
OptimalChiC4NoGamma.mc
OptimalChiC4NoGamma.method
OptimalChiC4NoGamma.mj
OptimalChiC4NoGamma.mjoc
OptimalChiC4NoGamma.pmodel_const
OptimalChiC4NoGamma.required_env_variables
OptimalChiC4NoGamma.shape
OptimalChiC4NoGamma.xi
OptimalChiC4NoGammaRootzoneStress
OptimalChiC4NoGammaRootzoneStress.estimate_chi()
OptimalChiC4NoGammaRootzoneStress.set_beta()
OptimalChiC4NoGammaRootzoneStress.summarize()
OptimalChiC4NoGammaRootzoneStress.beta
OptimalChiC4NoGammaRootzoneStress.chi
OptimalChiC4NoGammaRootzoneStress.ci
OptimalChiC4NoGammaRootzoneStress.env
OptimalChiC4NoGammaRootzoneStress.is_c4
OptimalChiC4NoGammaRootzoneStress.mc
OptimalChiC4NoGammaRootzoneStress.method
OptimalChiC4NoGammaRootzoneStress.mj
OptimalChiC4NoGammaRootzoneStress.mjoc
OptimalChiC4NoGammaRootzoneStress.pmodel_const
OptimalChiC4NoGammaRootzoneStress.required_env_variables
OptimalChiC4NoGammaRootzoneStress.shape
OptimalChiC4NoGammaRootzoneStress.xi
OptimalChiC4RootzoneStress
OptimalChiC4RootzoneStress.estimate_chi()
OptimalChiC4RootzoneStress.set_beta()
OptimalChiC4RootzoneStress.summarize()
OptimalChiC4RootzoneStress.beta
OptimalChiC4RootzoneStress.chi
OptimalChiC4RootzoneStress.ci
OptimalChiC4RootzoneStress.env
OptimalChiC4RootzoneStress.is_c4
OptimalChiC4RootzoneStress.mc
OptimalChiC4RootzoneStress.method
OptimalChiC4RootzoneStress.mj
OptimalChiC4RootzoneStress.mjoc
OptimalChiC4RootzoneStress.pmodel_const
OptimalChiC4RootzoneStress.required_env_variables
OptimalChiC4RootzoneStress.shape
OptimalChiC4RootzoneStress.xi
OptimalChiLavergne20C3
OptimalChiLavergne20C3.estimate_chi()
OptimalChiLavergne20C3.set_beta()
OptimalChiLavergne20C3.summarize()
OptimalChiLavergne20C3.beta
OptimalChiLavergne20C3.chi
OptimalChiLavergne20C3.ci
OptimalChiLavergne20C3.env
OptimalChiLavergne20C3.is_c4
OptimalChiLavergne20C3.mc
OptimalChiLavergne20C3.method
OptimalChiLavergne20C3.mj
OptimalChiLavergne20C3.mjoc
OptimalChiLavergne20C3.pmodel_const
OptimalChiLavergne20C3.required_env_variables
OptimalChiLavergne20C3.shape
OptimalChiLavergne20C3.xi
OptimalChiLavergne20C4
OptimalChiLavergne20C4.estimate_chi()
OptimalChiLavergne20C4.set_beta()
OptimalChiLavergne20C4.summarize()
OptimalChiLavergne20C4.beta
OptimalChiLavergne20C4.chi
OptimalChiLavergne20C4.ci
OptimalChiLavergne20C4.env
OptimalChiLavergne20C4.is_c4
OptimalChiLavergne20C4.mc
OptimalChiLavergne20C4.method
OptimalChiLavergne20C4.mj
OptimalChiLavergne20C4.mjoc
OptimalChiLavergne20C4.pmodel_const
OptimalChiLavergne20C4.required_env_variables
OptimalChiLavergne20C4.shape
OptimalChiLavergne20C4.xi
OptimalChiPrentice14
OptimalChiPrentice14.estimate_chi()
OptimalChiPrentice14.set_beta()
OptimalChiPrentice14.summarize()
OptimalChiPrentice14.beta
OptimalChiPrentice14.chi
OptimalChiPrentice14.ci
OptimalChiPrentice14.env
OptimalChiPrentice14.is_c4
OptimalChiPrentice14.mc
OptimalChiPrentice14.method
OptimalChiPrentice14.mj
OptimalChiPrentice14.mjoc
OptimalChiPrentice14.pmodel_const
OptimalChiPrentice14.required_env_variables
OptimalChiPrentice14.shape
OptimalChiPrentice14.xi
OptimalChiPrentice14RootzoneStress
OptimalChiPrentice14RootzoneStress.estimate_chi()
OptimalChiPrentice14RootzoneStress.set_beta()
OptimalChiPrentice14RootzoneStress.summarize()
OptimalChiPrentice14RootzoneStress.beta
OptimalChiPrentice14RootzoneStress.chi
OptimalChiPrentice14RootzoneStress.ci
OptimalChiPrentice14RootzoneStress.env
OptimalChiPrentice14RootzoneStress.is_c4
OptimalChiPrentice14RootzoneStress.mc
OptimalChiPrentice14RootzoneStress.method
OptimalChiPrentice14RootzoneStress.mj
OptimalChiPrentice14RootzoneStress.mjoc
OptimalChiPrentice14RootzoneStress.pmodel_const
OptimalChiPrentice14RootzoneStress.required_env_variables
OptimalChiPrentice14RootzoneStress.shape
OptimalChiPrentice14RootzoneStress.xi
OPTIMAL_CHI_CLASS_REGISTRY
arrhenius
ArrheniusFactorABC
ArrheniusFactorABC.calculate_arrhenius_factor()
ArrheniusFactorABC.env
ArrheniusFactorABC.method
ArrheniusFactorABC.required_coefficients
ArrheniusFactorABC.required_env_variables
KattgeKnorrArrhenius
KattgeKnorrArrhenius.calculate_arrhenius_factor()
KattgeKnorrArrhenius.env
KattgeKnorrArrhenius.method
KattgeKnorrArrhenius.required_coefficients
KattgeKnorrArrhenius.required_env_variables
SimpleArrhenius
SimpleArrhenius.calculate_arrhenius_factor()
SimpleArrhenius.env
SimpleArrhenius.method
SimpleArrhenius.required_coefficients
SimpleArrhenius.required_env_variables
ARRHENIUS_METHOD_REGISTRY
quantum_yield
QuantumYieldABC
QuantumYieldABC.summarize()
QuantumYieldABC.array_reference_kphio_ok
QuantumYieldABC.env
QuantumYieldABC.kphio
QuantumYieldABC.method
QuantumYieldABC.reference_kphio
QuantumYieldABC.required_env_variables
QuantumYieldABC.shape
QuantumYieldABC.use_c4
QuantumYieldFixed
QuantumYieldFixed.summarize()
QuantumYieldFixed.array_reference_kphio_ok
QuantumYieldFixed.env
QuantumYieldFixed.kphio
QuantumYieldFixed.method
QuantumYieldFixed.reference_kphio
QuantumYieldFixed.required_env_variables
QuantumYieldFixed.shape
QuantumYieldFixed.use_c4
QuantumYieldSandoval
QuantumYieldSandoval.peak_quantum_yield()
QuantumYieldSandoval.summarize()
QuantumYieldSandoval.array_reference_kphio_ok
QuantumYieldSandoval.env
QuantumYieldSandoval.kphio
QuantumYieldSandoval.method
QuantumYieldSandoval.reference_kphio
QuantumYieldSandoval.required_env_variables
QuantumYieldSandoval.shape
QuantumYieldSandoval.use_c4
QuantumYieldTemperature
QuantumYieldTemperature.summarize()
QuantumYieldTemperature.array_reference_kphio_ok
QuantumYieldTemperature.env
QuantumYieldTemperature.kphio
QuantumYieldTemperature.method
QuantumYieldTemperature.reference_kphio
QuantumYieldTemperature.required_env_variables
QuantumYieldTemperature.shape
QuantumYieldTemperature.use_c4
QUANTUM_YIELD_CLASS_REGISTRY
functions
calculate_co2_to_ca()
calculate_ftemp_inst_rd()
calculate_gammastar()
calculate_kattge_knorr_arrhenius_factor()
calculate_kmm()
calculate_ns_star()
calculate_simple_arrhenius_factor()
isotopes
CarbonIsotopes
CarbonIsotopes.calculate_c3_discrimination()
CarbonIsotopes.calculate_c4_discrimination()
CarbonIsotopes.calculate_c4_discrimination_vonC()
CarbonIsotopes.summarize()
CarbonIsotopes.Delta13C
CarbonIsotopes.Delta13C_simple
CarbonIsotopes.Delta14C
CarbonIsotopes.c4
CarbonIsotopes.d13C_leaf
CarbonIsotopes.d13C_wood
CarbonIsotopes.d14C_leaf
CarbonIsotopes.isotopes_const
CarbonIsotopes.shape
competition
C3C4Competition
C3C4Competition.estimate_isotopic_discrimination()
C3C4Competition.summarize()
C3C4Competition.Delta13C_C3
C3C4Competition.Delta13C_C4
C3C4Competition.d13C_C3
C3C4Competition.d13C_C4
C3C4Competition.frac_c4
C3C4Competition.gpp_adv_c4
C3C4Competition.gpp_c3_contrib
C3C4Competition.gpp_c4_contrib
calculate_tree_proportion()
convert_gpp_advantage_to_c4_fraction()
acclimation
AcclimationModel
AcclimationModel.apply_acclimation()
AcclimationModel.fill_daily_to_subdaily()
AcclimationModel.get_daily_means()
AcclimationModel.get_window_values()
AcclimationModel.set_include()
AcclimationModel.set_nearest()
AcclimationModel.set_window()
AcclimationModel.allow_holdover
AcclimationModel.allow_partial_data
AcclimationModel.alpha
AcclimationModel.datetimes
AcclimationModel.fill_method
AcclimationModel.include
AcclimationModel.n_days
AcclimationModel.n_obs
AcclimationModel.observation_dates
AcclimationModel.observation_times
AcclimationModel.padded_datetimes
AcclimationModel.padding
AcclimationModel.sample_datetimes
AcclimationModel.sample_datetimes_max
AcclimationModel.sample_datetimes_mean
AcclimationModel.spacing
AcclimationModel.update_point
two_leaf
TwoLeafAssimilation
TwoLeafAssimilation.A_shade
TwoLeafAssimilation.A_sun
TwoLeafAssimilation.Aj_shade
TwoLeafAssimilation.Aj_sun
TwoLeafAssimilation.Av_shade
TwoLeafAssimilation.Av_sun
TwoLeafAssimilation.J_shade
TwoLeafAssimilation.J_sun
TwoLeafAssimilation.Jmax25_shade
TwoLeafAssimilation.Jmax25_sun
TwoLeafAssimilation.Jmax_shade
TwoLeafAssimilation.Jmax_sun
TwoLeafAssimilation.Vcmax25_canopy
TwoLeafAssimilation.Vcmax25_shade
TwoLeafAssimilation.Vcmax25_sun
TwoLeafAssimilation.Vcmax_shade
TwoLeafAssimilation.Vcmax_sun
TwoLeafAssimilation.canopy_extinction_coef
TwoLeafAssimilation.gpp
TwoLeafAssimilation.irradiance
TwoLeafAssimilation.pmodel
TwoLeafIrradiance
TwoLeafIrradiance.beam_extinction_coef
TwoLeafIrradiance.beam_irradiance
TwoLeafIrradiance.beam_reflectance
TwoLeafIrradiance.canopy_irradiance
TwoLeafIrradiance.core_constants
TwoLeafIrradiance.diffuse_irradiance
TwoLeafIrradiance.fraction_of_diffuse_radiation
TwoLeafIrradiance.leaf_area_index
TwoLeafIrradiance.patm
TwoLeafIrradiance.ppfd
TwoLeafIrradiance.scattered_beam_extinction_coef
TwoLeafIrradiance.shaded_absorbed_irradiance
TwoLeafIrradiance.solar_elevation
TwoLeafIrradiance.sunlit_absorbed_irradiance
TwoLeafIrradiance.sunlit_beam_irradiance
TwoLeafIrradiance.sunlit_diffuse_irradiance
TwoLeafIrradiance.sunlit_scattered_irradiance
TwoLeafIrradiance.two_leaf_constants
calculate_beam_extinction_coef()
calculate_beam_reflectance()
calculate_canopy_extinction_coef()
calculate_canopy_irradiance()
calculate_canopy_vcmax25()
calculate_electron_transport_rate()
calculate_fraction_of_diffuse_radiation()
calculate_jmax25()
calculate_sun_vcmax25()
calculate_sunlit_beam_irradiance()
calculate_sunlit_diffuse_irradiance()
calculate_sunlit_scattered_irradiance()
PModel
PModel.apply_gpp_conversion_factor()
PModel.apply_gpp_penalty_factor()
PModel.remove_gpp_penalty_factor()
PModel.summarize()
PModel.to_subdaily()
PModel.A_c
PModel.A_j
PModel.J
PModel.c4
PModel.core_const
PModel.env
PModel.gpp
PModel.gpp_conversion_factor
PModel.gpp_penalty_factor
PModel.gs
PModel.iwue
PModel.jmax
PModel.jmax25
PModel.jmaxlim
PModel.kphio
PModel.lue
PModel.method_arrhenius
PModel.method_jmaxlim
PModel.method_kphio
PModel.method_optchi
PModel.optchi
PModel.pmodel_const
PModel.reference_kphio
PModel.shape
PModel.vcmax
PModel.vcmax25
PModelABC
PModelABC.apply_gpp_conversion_factor()
PModelABC.apply_gpp_penalty_factor()
PModelABC.remove_gpp_penalty_factor()
PModelABC.summarize()
PModelABC.A_c
PModelABC.A_j
PModelABC.J
PModelABC.c4
PModelABC.core_const
PModelABC.env
PModelABC.gpp
PModelABC.gpp_conversion_factor
PModelABC.gpp_penalty_factor
PModelABC.gs
PModelABC.iwue
PModelABC.jmax
PModelABC.jmax25
PModelABC.jmaxlim
PModelABC.kphio
PModelABC.lue
PModelABC.method_arrhenius
PModelABC.method_jmaxlim
PModelABC.method_kphio
PModelABC.method_optchi
PModelABC.optchi
PModelABC.pmodel_const
PModelABC.reference_kphio
PModelABC.shape
PModelABC.vcmax
PModelABC.vcmax25
SubdailyPModel
SubdailyPModel.apply_gpp_conversion_factor()
SubdailyPModel.apply_gpp_penalty_factor()
SubdailyPModel.remove_gpp_penalty_factor()
SubdailyPModel.summarize()
SubdailyPModel.A_c
SubdailyPModel.A_j
SubdailyPModel.J
SubdailyPModel.acclim_model
SubdailyPModel.c4
SubdailyPModel.core_const
SubdailyPModel.env
SubdailyPModel.gpp
SubdailyPModel.gpp_conversion_factor
SubdailyPModel.gpp_penalty_factor
SubdailyPModel.gs
SubdailyPModel.iwue
SubdailyPModel.jmax
SubdailyPModel.jmax25
SubdailyPModel.jmax25_daily_optimal
SubdailyPModel.jmax25_daily_realised
SubdailyPModel.jmaxlim
SubdailyPModel.kphio
SubdailyPModel.lue
SubdailyPModel.method_arrhenius
SubdailyPModel.method_jmaxlim
SubdailyPModel.method_kphio
SubdailyPModel.method_optchi
SubdailyPModel.optchi
SubdailyPModel.pmodel_acclim
SubdailyPModel.pmodel_const
SubdailyPModel.previous_realised
SubdailyPModel.reference_kphio
SubdailyPModel.shape
SubdailyPModel.vcmax
SubdailyPModel.vcmax25
SubdailyPModel.vcmax25_daily_optimal
SubdailyPModel.vcmax25_daily_realised
SubdailyPModel.xi_daily_optimal
SubdailyPModel.xi_daily_realised
DailySolarFluxes
DailySolarFluxes.crossover_hour_angle
DailySolarFluxes.daily_ppfd
DailySolarFluxes.daily_solar_radiation
DailySolarFluxes.daytime_net_radiation
DailySolarFluxes.declination
DailySolarFluxes.distance_factor
DailySolarFluxes.lambda_
DailySolarFluxes.net_longwave_radiation
DailySolarFluxes.nighttime_net_radiation
DailySolarFluxes.nu
DailySolarFluxes.ru
DailySolarFluxes.rv
DailySolarFluxes.rw
DailySolarFluxes.sunset_hour_angle
DailySolarFluxes.transmissivity
DailyEvapFluxes
DailyEvapFluxes.estimate_aet()
DailyEvapFluxes.cond
DailyEvapFluxes.econ
DailyEvapFluxes.eet_d
DailyEvapFluxes.lv
DailyEvapFluxes.pet_d
DailyEvapFluxes.psy
DailyEvapFluxes.pw
DailyEvapFluxes.rx
DailyEvapFluxes.sat
SplashModel
SplashModel.calculate_soil_moisture()
SplashModel.estimate_daily_water_balance()
SplashModel.estimate_initial_soil_moisture()
SplashModel.dates
SplashModel.elv
SplashModel.evap
SplashModel.kWm
SplashModel.lat
SplashModel.pa
SplashModel.pn
SplashModel.sf
SplashModel.shape
SplashModel.solar
SplashModel.tc
Development
poetry
pre-commit
mypy
pyrealm-build-data
pytest
doctest
pytest-coverage
codecov
pre-commit_autoupdate.yaml
pyrealm_ci.yaml
pyrealm_publish.yaml
pyrealm_build_data
bigleaf
rpmodel
sandoval_kphio
subdaily
t_model
uk_data
Reference
The pyrealm package.